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Mammalian Promoter Database (MPromDb) is an integrated novel database for gene promoters with experimentally supported annotation of transcription start sites (TSS), cis-regulatory elements, CpG islands and ChIP-chip experimental results with intuitively visualized presentation. The current version of MPromDb 27,945 genes (13,780 Human, 9,023 Mouse, 5151 Rat), 6,394 transcription factor binding sites (3,016 from human, 2,528 mouse and 850 rat) and 1,771 transcription factors with links to PubMed and GenBank references. Target promoters of 5 transcription factors identified by the chromatin immunoprecipitation microarray (ChIP-chip) assays are integrated into MPromDb. MPromDb serves as a portal for genome-wide promoter analysis of data generated by ChIP-chip experimental studies. MPromDb is implemented by Relational Database and the visualization of promoter annotation is supported by the Promoter Annotation Visualization Markup Language (PAVML), and Genome Data Visualization Toolkit (GDVTK). Read more.... Sun H, Palaniswamy S, Pohar T, Jin V,Davuluri RV, MPromDb: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Research, 2006, Vol. 34, Database issue D98-D103. Supplementary tables |
Search MPromDb by using Gene Symbol (e.g. Bax), GenBank Accession Number (e.g. NM_001086), Gene ID (e.g. 12028) and Unigene ID (e.g. Hs.159428) with the quick search below or search MPromDb with Advanced Search |
