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OMGProm is an integrated
resource of Orthologous
Mammalian Gene
Promoters.The increasing
availability of genomic data from multiple organisms has provided the
necessity for integrated, comparative sequence-based tools that contribute
to the decoding of genomic sequences and the identification of those sequences
that induces gene regulation. The availability of orthologous gene sequences
has encouraged cross-species comparison to identify key genomic regions
that have been conserved across an orthologous counterpart. OMGProm is
currently composed of human-mouse orthologous gene promoters with corresponding
downloadable sequences, alignments (ClustAlW & Blastz) and links to
substantive resources. We obtained the promoters from an extensive range
of sources including GenBank, DBTSS, Ensembl, dbEST and RefSeq ; the current
version of OMGProm, following
a stringent filtering process, contains promoters of 5,717 unique human
mouse orthologous genes which contains 8,347 promoters including alternative
promoters for the orthologous genes. All of the data acquired from the
several sources are primarily associated with their UniGene ID. OMGProm
can be searched by Gene Symbol, Unigene Id
& Genbank Accession Number.
Please read the README file (pdf
or doc)for detailed information on how
to navigate the database.
Click here for supplementary information.
Download Information
We provide free download of Human & Mouse promoter sequences and its
alignments. You have to register yourself to download the data. Click
here to register & download
the data from OMGProm.
Palaniswamy, S.K., Jin, V.X., Sun, H. and Davuluri, R.V.
OMGProm: A Database of Orthologous Mammalian Gene
Promoters.
Bioinformatics. 2004
Abstract
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